Data and software can be found on our GitHub site
Ojala DS, Sun S, Santiago-Ortiz JL, Shapiro MG, Romero PA, and Schaffer DV. In Vivo Selection of a Computationally Designed SCHEMA AAV Library Yields a Novel Variant for Infection of Adult Neural Stem Cells in the Subventricular Zone. Molecular Therapy (2017) doi: 10.1016/j.ymthe.2017.09.006
Seto J and Romero PA. Shaping it up: Design and engineering of biominerals and crystalline materials from the bottom up. Biomineralization and Biomaterials (2015) Eds. Aparicio C, Ginebra MP (Woodhead Publishing, Cambridge), 3-44.
Romero PA*, Shapiro MG*, Arnold FH, and Jasanoff A. Directed evolution of protein-based neurotransmitter sensors for MRI. Meth. Mol. Biol. (2013) 955, 193-205. [PubMed]
Romero PA*, Stone E*, Lamb C, Chantranupong L, Krause A, Miklos AE, Hughes RA, Fechtel B, Ellington AD, Arnold FH, and Georgiou G. SCHEMA designed variants of human arginase I and II reveal sequence elements important to stability and catalysis. ACS Synth. Biol. (2012) 1, 221-228. [PubMed] [pdf]
Heinzelman P, Komor RS, Kanaan A, Romero PA, Yu X, Mohler S, Snow CD and Arnold FH. Efficient screening of fungal cellobiohydrolase class I enzymes for thermostabilizing sequence blocks by SCHEMA structure-guided recombination. Protein Eng. Des. Sel. (2010) 23, 871-880. [PubMed] [pdf]
Shapiro MG*, Westmeyer GG*, Romero PA, Szablowski JO, Kster B, Shah A, Otey CR, Langer R, Arnold FH and Jasanoff A. Directed evolution of a magnetic resonance imaging contrast agent for noninvasive imaging of dopamine. Nat. Biotechnol. (2010) 28, 264-272. [PubMed] [pdf]